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microfluidic pcr
Lee K. HouseJun 4, 20255 min read

How Rapid Prototyping Accelerates Microfluidic PCR Innovations

Who doesn’t love microfluidic PCR analysis? 

Okay, now that we’ve narrowed down the audience, let’s talk about making DNA testing faster, more efficient, and more reliable. 

As a converter who collaborates with entrepreneurs and major healthcare companies to develop microfluidic devices, Strouse knows the importance of proving your initial design through an effective prototype.

Keep reading to learn how rapid prototyping benefits microfluidic PCR development and how you can streamline and enhance your development process. 

What is a Microfluidic PCR?

PCR (polymerase chain reaction) analysis is a laboratory method that can amplify trace amounts of DNA or RNA targets present in sample extracts to create a large enough signal that can be detected and identified by machinery and personnel.

PCR tests evaluate samples in molecular microbiology labs. For instance, a COVID-19 polymerase chain reaction (PCR) test done in a lab will amplify the RNA to make tiny traces of the virus visible, whereas the rapid, or antigen test, simply checks the proteins for an active virus

Microfluidic PCR protocols utilize extremely low volumes of fluid (extracted DNA + master mix full of specialized primers and probes) to test different analytes, primarily pathogens.

Microfluidics Prototyping: How Does it Work?

In microfluidic PCR, a single microliter can make a massive difference in the final results. Errors in the fluid flow may lead to failed tests, wasted supplies, and funding. Prototyping your part allows you to craft optimized designs for devices and consumables.

As with all custom parts, microfluidic prototyping begins with a technical drawing that includes measurements and tolerances for building an accurate design prototype. 

Once you have acquired a technical drawing, you may begin testing materials and/or design samples to see how they function. 

There are multiple ways to build microfluidic prototypes, but the best method will likely depend on your materials and design. 

1. LASER CUTTING

Laser cutting is a common method of fabricating complex microfluidic designs from flexible materials. These include films, meshes, and tapes with hydrophilic or hydrophobic properties, depending on the desired goal, as well as wicking materials. Many of these parts also use acrylic, PET, or PETG.

In laser prototyping, a manufacturer typically uses a flat-bed laser to cut out the part design while hand-laminating any necessary layers. Lasers can cut highly precise features such as fluid channels and PCR reaction chambers. 

Due to the size of the features, which can rule out hard tooling, microfluidic parts may use laser cutting for both prototyping and full-scale production, where larger quantities are laser cut on a machine press. 

2. SOFT LITHOGRAPHY

Soft lithography is a method of molding and embossing 3D structures used in many microfluidic devices. It begins with the construction of silicone molds or stamps containing tiny structures like microfluidic sensors and channels. Next, biocompatible elastomers like PDMS are used to create a three-dimensional impression of the device’s pattern. These copies can then be used for rapid analysis. 

The main advantages of soft lithography are that it can achieve nanometer to micrometer precision (often features less than 25 μm) and create three-dimensional or curved structures

3. THERMOPLASTIC INJECTION MOLDING

Some manufacturers build microfluidic prototypes by injecting thermoplastic into a mold, which can offer higher durability than PDMS. This method can be used in conjunction with techniques like embossing or 3D printing to create the most accurate representation of a part design. 

Although thermoplastic injection molding may increase the manufacturing efficiency, it might limit the size of the features. In addition, because thermoplastics are hydrophobic, they may require precautions against unwanted interactions between reagents and channel surfaces to retain the sample mobility and prevent surface absorption.

Strouse does not perform soft lithography or molding, and our experience lies in building complex laser-cut parts; however, we recognize that, in some instances, these options could be the better choice for your application. 

The Benefits of Rapid Prototyping in Microfluidics Design 

Discussing your material and design tolerances on paper is one thing, but witnessing how they perform in their intended role will give you the clarity to make the necessary adjustments.  

i. DESIGN IMPROVEMENTS

Overcomplicated designs can lead to more challenging, and therefore more expensive, production processes. Rapid prototyping allows you to test simplified design versions to avoid exorbitant manufacturing costs. 

Common ways to simplify microfluidic parts include:

  1. Combining Layers

Fewer layers will lead to a more straightforward manufacturing process requiring fewer laminations. 

  1. Testing Functional Tolerances

Tolerances define the amount of variability a specification or measurement can have. Your functional tolerances should demonstrate the range of acceptable measurements your part requires in order to function as intended.

Rapid prototyping allows you to test the higher and lower end of your design measurements to help you determine your functional tolerances. 

Loosening the tolerances of microfluidic channels and other features will significantly reduce the cost of your microfluidic system. Smaller feature sizes may require more expensive tooling or the use of a laser, which runs slower than traditional tooling and increases the production time. 

The ability to “fail fast” through rapid prototyping also creates a quicker turnaround on design changes, which can help speed up your timeline. 

  1. Planning For the Overall Shape

Your final part shape may have extremely precise features that require alignment. Planning for the overall shape of your design means establishing functional tolerances, which enable the device’s key objectives, and ensuring that the design suits your intended application method. 

ii. MATERIAL SAMPLING

Testing different materials will allow you to observe whether they are compatible with your design. 

Depending on your microfluidics application, cheaper alternatives may exist. However, you’ll obviously want to test the materials to ensure they function to provide accurate PCR analysis results. 

Prototyping Your Microfluidics PCR Designs

Components for microfluidics PCR technology require a high level of precision that you’ll want to validate before moving from the testing stage to full-scale production. 

When developing a new product, it’s all too easy to accidentally allow critical design flaws to hinder the manufacturing process. By prototyping your part early on, you can make thoughtful design decisions that will lead to an efficient production process. 

Start your project today, and our experts will provide custom part samples and help you determine the optimal manufacturing strategy for your PCR devices. 

For more information on microfluidics rapid prototyping and custom manufacturing, check out our Learning Center

 

Special thanks to Melissa Schlein and Lars Widelski (my two favorite biologists) for their insight into PCR testing. 

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Lee K. House

Content Marketing Manager at Strouse. Lee is a lifelong reader with a penchant for breaking down scientific and engineering concepts for those who don't spend all day clicking between fancy-looking graphs and a blank word document.

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